> Hi All,
> I'm using aroma to analyze CEL files from 141 SNP 6.0 arrays. I fit
> the quality assessment model as follows:
> plm = RmaPlm(csR)
> fit(plm, verbose = log)
> qam = QualityAssessmentModel(plm)
> Then I'd like to produce NUSE and RLE plots for 10 arrays at a time.
> Can someone please tell me how to do this?
plotNuse() and plotRle() for QualityAssessmentModel takes argument
Note that the NUSE and RLE estimates are, as wanted, calculated using
the complete data set, that is, the 'arrays' argument is only applied
to the plotting part.
> Thanks in advance for your response,
> When reporting problems on aroma.affymetrix, make sure 1) to run the latest
> version of the package, 2) to report the output of sessionInfo() and
> traceback(), and 3) to post a complete code example.
> You received this message because you are subscribed to the Google Groups
> "aroma.affymetrix" group with website http://www.aroma-project.org/.
> To post to this group, send email to [hidden email] > To unsubscribe and other options, go to http://www.aroma-project.org/forum/ >
When reporting problems on aroma.affymetrix, make sure 1) to run the latest version of the package, 2) to report the output of sessionInfo() and traceback(), and 3) to post a complete code example.