[aroma.affymetrix] Missing file "bpmapCluster2Cdf.R" in "Create a CDF from a BpMap"

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[aroma.affymetrix] Missing file "bpmapCluster2Cdf.R" in "Create a CDF from a BpMap"

vegard
Hi, I am trying to make a CDF as described in the page
"How to: Create a CDF (and associated) files from a BpMap file (tiling
arrays)"
http://aroma-project.org/node/42

I am supposed to use the script bpmapCluster2Cdf.R, but the link is
dead ("forbidden")
http://129.94.136.7/file_dump/mark/bpmapCluster2Cdf.R .
I was not able to find the script or methods elsewhere.

Can you help me?

Best Regards
Vegard Nygaard.

--
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RE: [aroma.affymetrix] Missing file "bpmapCluster2Cdf.R" in "Create a CDF from a BpMap"

Steven McKinney
I see a copy dated Nov 28 2008 at
   https://r-forge.r-project.org/scm/viewvc.php/trunk/Rpacks/aroma.affymetrix/aroma.affymetrix/R/BpmapCluster2Cdf.R?view=log&root=aroma-dots&pathrev=1206

That web page suggests that there is a revision 1208 though it does not show.
Hopefully this is enough to get you started.

Steven McKinney

Statistician
Molecular Oncology and Breast Cancer Program
British Columbia Cancer Research Centre


________________________________________
From: [hidden email] [[hidden email]] On Behalf Of vegard [[hidden email]]
Sent: October 20, 2010 8:55 AM
To: aroma.affymetrix
Subject: [aroma.affymetrix] Missing file "bpmapCluster2Cdf.R" in "Create a CDF from a BpMap"

Hi, I am trying to make a CDF as described in the page
"How to: Create a CDF (and associated) files from a BpMap file (tiling
arrays)"
http://aroma-project.org/node/42

I am supposed to use the script bpmapCluster2Cdf.R, but the link is
dead ("forbidden")
http://129.94.136.7/file_dump/mark/bpmapCluster2Cdf.R .
I was not able to find the script or methods elsewhere.

Can you help me?

Best Regards
Vegard Nygaard.

--
When reporting problems on aroma.affymetrix, make sure 1) to run the latest version of the package, 2) to report the output of sessionInfo() and traceback(), and 3) to post a complete code example.


You received this message because you are subscribed to the Google Groups "aroma.affymetrix" group with website http://www.aroma-project.org/.
To post to this group, send email to [hidden email]
To unsubscribe and other options, go to http://www.aroma-project.org/forum/

--
When reporting problems on aroma.affymetrix, make sure 1) to run the latest version of the package, 2) to report the output of sessionInfo() and traceback(), and 3) to post a complete code example.


You received this message because you are subscribed to the Google Groups "aroma.affymetrix" group with website http://www.aroma-project.org/.
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Re: [aroma.affymetrix] Missing file "bpmapCluster2Cdf.R" in "Create a CDF from a BpMap"

Mark Robinson
In reply to this post by vegard
Apologies folks.  Inadvertent file permissions change.  It should work now.

Cheers,
Mark


---------- Forwarded message ----------
From: vegard <[hidden email]>
Date: Thu, Oct 21, 2010 at 2:55 AM
Subject: [aroma.affymetrix] Missing file "bpmapCluster2Cdf.R" in
"Create a CDF from a BpMap"
To: "aroma.affymetrix" <[hidden email]>


Hi, I am trying to make a CDF as described in the page
"How to: Create a CDF (and associated) files from a BpMap file (tiling
arrays)"
http://aroma-project.org/node/42

I am supposed to use the script bpmapCluster2Cdf.R, but the link is
dead ("forbidden")
http://129.94.136.7/file_dump/mark/bpmapCluster2Cdf.R .
I was not able to find the script or methods elsewhere.

Can you help me?

Best Regards
Vegard Nygaard.

--
When reporting problems on aroma.affymetrix, make sure 1) to run the
latest version of the package, 2) to report the output of
sessionInfo() and traceback(), and 3) to post a complete code example.


You received this message because you are subscribed to the Google
Groups "aroma.affymetrix" group with website
http://www.aroma-project.org/.
To post to this group, send email to [hidden email]
To unsubscribe and other options, go to http://www.aroma-project.org/forum/

--
When reporting problems on aroma.affymetrix, make sure 1) to run the latest version of the package, 2) to report the output of sessionInfo() and traceback(), and 3) to post a complete code example.


You received this message because you are subscribed to the Google Groups "aroma.affymetrix" group with website http://www.aroma-project.org/.
To post to this group, send email to [hidden email]
To unsubscribe and other options, go to http://www.aroma-project.org/forum/