aroma.affymetrix

This forum is an archive for the mailing list aroma-affymetrix@googlegroups.com (more options) Messages posted here will be sent to this mailing list.
1 ... 78910111213
Topics (452)
Replies Last Post Views
[aroma.affymetrix] Error in list(`process(acc)` = <environment>, `process.AllelicCrosstalkCalibration(acc)` = <environment>, Exception: Failed to retrieve genome information for this chip type: by sean nj
5
by Tarca, Adi
[aroma.affymetrix] detection call by marco
0
by marco
[aroma.affymetrix] Function Clash With IRanges by Dario Strbenac-2
4
by Dario Strbenac
[aroma.affymetrix] aroma.affymetrix v2.2.0 released by Henrik Bengtsson-4
0
by Henrik Bengtsson-4
[aroma.affymetrix] errors in AffymetrixCelSet$byName and process(acc, verbose=verbose) by Irina Ostrovnaya
3
by Henrik Bengtsson-4
[aroma.affymetrix] RAM scale factor by Jean-Paul
6
by sean nj
[aroma.affymetrix] problem processing output of AllelicCrosstalkCalibration by DGoode
8
by DGoode
[aroma.affymetrix] MoGene ST 1.0 CDF file by sabrina
1
by Henrik Bengtsson-4
[aroma.affymetrix] Normalizing Hs_PromPR_v02 data by Aikseng
1
by Aikseng
[aroma.affymetrix] Cannot read .cel files for chip type HuEx-1_0-st-v2 by Matthew Weiser
2
by Matthew Weiser
[aroma.affymetrix] How to extract raw probe intensity from .CEL file by hsingjun cheung
7
by Mark Robinson-3
[aroma.affymetrix] aroma.affymetrix can't read cdf file by Yaping Feng-2
2
by Yaping Feng-2
Re: Downstream gene expression analysis? (Was: Re: [aroma.affymetrix] Problems with custom CDF when doing RMA on affy HG-U133_Plus_2 chip CEL files) by Henrik Bengtsson-4
2
by Henrik Bengtsson-4
[aroma.affymetrix] Problem creating csU MAT normalization by Jill
3
by Jill
[aroma.affymetrix] convertCdf() crashes R while converting BrainArray custom CDF for Affy HT_HG-U133_Plus_PM by sean nj
7
by sean nj
[aroma.affymetrix] Accessing individual probe intensities by Maria Rodrigo-Doming...
4
by Maria Rodrigo-Doming...
[aroma.affymetrix] exon level data.frame dimensions by Anita
1
by Henrik Bengtsson-4
[aroma.affymetrix] FIRMA: using setMergeGroups() for ExonRmaPlm to define groups by Marlen
1
by Marlen
[aroma.affymetrix] Problems with custom CDF when doing RMA on affy HG-U133_Plus_2 chip CEL files by sean nj
2
by Henrik Bengtsson-4
[aroma.affymetrix] Problem with custome CDF for affy HG-U133_Plus_2 data analysis. by sean nj
0
by sean nj
[aroma.affymetrix] Problem with custome CDF for affy HG-U133_Plus_2 data analysis. by sean nj
0
by sean nj
using SetMergeGroups for defining costum transcript cluster by Marlen Mueller
0
by Marlen Mueller
[aroma.affymetrix] Combine paired and unpaired CN analysis by Kai-2
5
by Henrik Bengtsson-4
[aroma.affymetrix] append() for celSets by Dario Strbenac-2
1
by Henrik Bengtsson-4
[aroma.affymetrix] Re: Question about Firma by Mark Robinson
0
by Mark Robinson
Simple CEL reading problem by kwyattm
0
by kwyattm
[aroma.affymetrix] Unpaired copy number analysis with doCRMAv2 by Xavi Solé
3
by Xavi Solé
[aroma.affymetrix] Problem in indexof with version aroma.affymetrix 2.1.0 by Ravi Sharma
5
by Ravi Sharma
[aroma.affymetrix] Error in rescale(..) during allelic crosstalk calibration by David JH Shih
1
by Henrik Bengtsson-4
[aroma.affymetrix] Details on the CalMaTe method by Jonas
0
by Jonas
[aroma.affymetrix] copy number gain /loss by Yan Jiao
5
by Henrik Bengtsson-4
[aroma.affymetrix] GWS_6 hg19 by Mete Civelek
7
by cstratowa
[aroma.affymetrix] Affy 6.0 paired copy number analysis by Xavi Solé
1
by Henrik Bengtsson-4
[aroma.affymetrix] CBS using doCRMAv2 and CalMaTe by mortiz
1
by Henrik Bengtsson-4
[aroma.affymetrix] Probe genomic location by Irene Pylypenko
8
by Henrik Bengtsson-4
1 ... 78910111213